Evotec Technologies Acapella Scripts and Procedures
NEW: Texture analysis suite
Procedures to calculate Haralick’s texture features, threshold adjacency statistics, and radial moments.
‘Colocalisation Coefficients’ procedure
Calculates Pearson’s, Mander’s, ICQ and Overlap coefficients for two user defined images using the area defined by a user selected objects list.
‘Background correction’ procedure
Subtracts the mean intensity of the background from an image. The background is assumed to be the area outside the user-defined object list. By Karsten Kottig, Evotec.
NEW: Also includes a Rolling Ball like algorithm for background correction.
‘Cell segmentation’ example script
Illustrates how to:
– generate stencils of different subcellular compartments
– calculate mean intensity of different compartments
– calculate the ratio of two compartments
‘Nearest Neighbour’ Deblur
Performs a crude nearest neighbour ‘deblur’ based on a top, middle and bottom slice.
Useful for combining tables, outputting object-level data to text files, retrieving experimental information.